chr6:52187772:A>G Detail (hg38) (IL17A)
Information
Genome
| Assembly | Position |
|---|---|
| hg19 | chr6:52,052,570-52,052,570 View the variant detail on this assembly version. |
| hg38 | chr6:52,187,772-52,187,772 |
HGVS
| Type | Transcript | Protein |
|---|---|---|
| RefSeq | ||
| Ensemble | ENST00000648244.1:c.197A>G | ENST00000648244.1:p.Tyr66Cys |
Summary
MGeND
| Clinical significance | |
| Variant entry | |
| GWAS entry | |
| Disease area statistics | Show details |
Disease area statistics
[No Data.]
MGeND
[No Data.]
ClinVar
[No Data.]
CIViC
[No Data.]
DisGeNET
| Score | Disease name | Description | Source | Pubmed | Links |
|---|---|---|---|---|---|
| <0.001 | Chronic gastritis | We evaluated the relationship between IL-17A G197A, IL-17F A7488G and IL23R+2199... | BeFree | 26151690 | Detail |
| 0.006 | stomach carcinoma | The present meta-analysis showed the IL- 17A G197A polymorphism is associated wi... | BeFree | 24965422 | Detail |
| <0.001 | Helicobacter pylori infection | We evaluated the relationship between IL-17A G197A, IL-17F A7488G and IL23R+2199... | BeFree | 26151690 | Detail |
| 0.006 | stomach carcinoma | We firstly show that the polymorphism of IL-17A G197A but not C1249T is a risk f... | BeFree | 25008567 | Detail |
| 0.009 | Malignant neoplasm of stomach | The present meta-analysis showed the IL- 17A G197A polymorphism is associated wi... | BeFree | 24965422 | Detail |
| 0.002 | colorectal cancer | The haplotypes of IL-17A G197A/IL-17F T7488C and IL-23R were not significantly a... | BeFree | 25680555 | Detail |
| <0.001 | Helicobacter pylori infection | We evaluated the relationship between IL-17A G197A, IL-17F A7488G and IL23R+2199... | BeFree | 26151690 | Detail |
| <0.001 | Helicobacter pylori infection | We evaluated the relationship between IL-17A G197A, IL-17F A7488G and IL23R+2199... | BeFree | 26151690 | Detail |
| 0.004 | Carcinogenesis | IL-17A G197A and C1249T polymorphisms in gastric carcinogenesis. | BeFree | 25008567 | Detail |
| 0.002 | colorectal carcinoma | The haplotypes of IL-17A G197A/IL-17F T7488C and IL-23R were not significantly a... | BeFree | 25680555 | Detail |
| <0.001 | Helicobacter pylori infection | We evaluated the relationship between IL-17A G197A, IL-17F A7488G and IL23R+2199... | BeFree | 26151690 | Detail |
| 0.009 | Malignant neoplasm of stomach | We firstly show that the polymorphism of IL-17A G197A but not C1249T is a risk f... | BeFree | 25008567 | Detail |
| 0.001 | Helicobacter pylori infection | We evaluated the relationship between IL-17A G197A, IL-17F A7488G and IL23R+2199... | BeFree | 26151690 | Detail |
| <0.001 | Helicobacter pylori infection | We evaluated the relationship between IL-17A G197A, IL-17F A7488G and IL23R+2199... | BeFree | 26151690 | Detail |
| <0.001 | Chronic gastritis | We evaluated the relationship between IL-17A G197A, IL-17F A7488G and IL23R+2199... | BeFree | 26151690 | Detail |
| <0.001 | Hematologic Neoplasms | This study retrospectively examined the impact of a single-nucleotide polymorphi... | BeFree | 21217785 | Detail |
| <0.001 | Helicobacter pylori infection | We evaluated the relationship between IL-17A G197A, IL-17F A7488G and IL23R+2199... | BeFree | 26151690 | Detail |
Annotation
Annotations
| Descrption | Source | Links |
|---|---|---|
| We evaluated the relationship between IL-17A G197A, IL-17F A7488G and IL23R+2199 A/C polymorphisms w... | DisGeNET | Detail |
| The present meta-analysis showed the IL- 17A G197A polymorphism is associated with a significantly i... | DisGeNET | Detail |
| We evaluated the relationship between IL-17A G197A, IL-17F A7488G and IL23R+2199 A/C polymorphisms w... | DisGeNET | Detail |
| We firstly show that the polymorphism of IL-17A G197A but not C1249T is a risk factor for gastric ca... | DisGeNET | Detail |
| The present meta-analysis showed the IL- 17A G197A polymorphism is associated with a significantly i... | DisGeNET | Detail |
| The haplotypes of IL-17A G197A/IL-17F T7488C and IL-23R were not significantly associated with CRC. | DisGeNET | Detail |
| We evaluated the relationship between IL-17A G197A, IL-17F A7488G and IL23R+2199 A/C polymorphisms w... | DisGeNET | Detail |
| We evaluated the relationship between IL-17A G197A, IL-17F A7488G and IL23R+2199 A/C polymorphisms w... | DisGeNET | Detail |
| IL-17A G197A and C1249T polymorphisms in gastric carcinogenesis. | DisGeNET | Detail |
| The haplotypes of IL-17A G197A/IL-17F T7488C and IL-23R were not significantly associated with CRC. | DisGeNET | Detail |
| We evaluated the relationship between IL-17A G197A, IL-17F A7488G and IL23R+2199 A/C polymorphisms w... | DisGeNET | Detail |
| We firstly show that the polymorphism of IL-17A G197A but not C1249T is a risk factor for gastric ca... | DisGeNET | Detail |
| We evaluated the relationship between IL-17A G197A, IL-17F A7488G and IL23R+2199 A/C polymorphisms w... | DisGeNET | Detail |
| We evaluated the relationship between IL-17A G197A, IL-17F A7488G and IL23R+2199 A/C polymorphisms w... | DisGeNET | Detail |
| We evaluated the relationship between IL-17A G197A, IL-17F A7488G and IL23R+2199 A/C polymorphisms w... | DisGeNET | Detail |
| This study retrospectively examined the impact of a single-nucleotide polymorphism (rs2275913, G197A... | DisGeNET | Detail |
| We evaluated the relationship between IL-17A G197A, IL-17F A7488G and IL23R+2199 A/C polymorphisms w... | DisGeNET | Detail |
Overlapped Transcript Coordinates
| Gene | Transcript ID | Exon Number | Chromosome | Start | Stop | Type | Amino Mutation | Transcript Position | Links |
|---|
Overlapped Transcript
| Gene | Transcript ID | Chromosome | Start | Stop | Links |
|---|
- Gene
- -
- dbSNP
- rs148704956 dbSNP
- Genome
- hg38
- Position
- chr6:52,187,772-52,187,772
- Variant Type
- snv
- Reference Allele
- A
- Alternative Allele
- G
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